代表性文章或专著
(#：共同一作; *：通讯作者)
[1]. Jin, J., Xu, F., Liu, Z., Shuai, J., & Li, X.* (2024). Quantifying the underlying landscape, entropy production and biological path of the cell fate decision between apoptosis and pyroptosis. Chaos, Solitons & Fractals, 178, 114328.
[2]. Li, X., Wu, M.*, & Shuai, J.* (2023). Clovibactin: a revolutionary antibiotic unleashing lethal efficacy against pathogens with little drug resistance. Science Bulletin, in press.
[3]. Jin, J., Xu, F., Liu, Z., Qi, H., Yao, C., Shuai, J., & Li, X.* (2023). Biphasic amplitude oscillator characterized by distinct dynamics of trough and crest. Physical Review E, 108(6), 064412.
[4]. Yao, C., Sun, J., Jin, J., Shuai, J., Li, X.*, Yao, Y.*, & Xu, X. (2023). The power law statistics of the spiking timing in a neuronal network. Chaos, Solitons & Fractals, 172, 113598.
[5]. He, Q.#, Zhong, C. Q.#, Li, X.#, Guo, H., Li, Y., Gao, M., ... & Han, J.* (2023). Dear-DIAXMBD: Deep Autoencoder Enables Deconvolution of Data-Independent Acquisition Proteomics. Research, 6, 0179.
[6]. Xu, F., Miao, D., Li, W., Jin, J., Liu, Z., Shen, C., ... & Li, X.* (2023). Specificity and competition of mRNAs dominate droplet pattern in protein phase separation. Physical Review Research, 5(2), 023159.
[7]. Hu, H., Feng, Z., Shuai, X. S., Lyu, J., Li, X.*, Lin, H.*, & Shuai, J. (2023). Identifying SARS-CoV-2 infected cells with scVDN. Frontiers in Microbiology, 14.
[8]. Qu, J., Shao, C., Ying, Y., Wu, Y., Liu, W., Tian, Y., Li, X.*, Yu, Z.*, & Shuai, J. (2022). The spring-like effect of microRNA-31 in balancing inflammatory and regenerative responses in colitis. Frontiers in Microbiology, 13, 1089729.
[9]. Li, X.*, Zhang, P., Yin, Z., Xu, F., Yang, Z. H., Jin, J., ... & Shuai, J.* (2022). Caspase-1 and Gasdermin D afford the optimal targets with distinct switching strategies in NLRP1b Inflammasome-induced cell death. Research, 2022.
[10]. Yao, C., Xu, F., Shuai, J., & Li, X.* (2022). Temperature-optimized propagation of synchronous firing rate in a feed-forward multilayer neuronal network. Physica A: Statistical Mechanics and its Applications, 596, 127139.
[11]. Chen, X., Zhu, R., Zhong, J., Ying, Y., Wang, W., Cao, Y., Cai, H., Li, X., Shuai, J., & Han, J. (2022). Mosaic composition of RIP1–RIP3 signalling hub and its role in regulating cell death. Nature Cell Biology, 24(4), 471-482.
[12]. Zhu, L., Li, X.*, Xu, F., Yin, Z., Jin, J., Liu, Z., ... & Shuai, J.* (2022). Network modeling-based identification of the switching targets between pyroptosis and secondary pyroptosis. Chaos, Solitons & Fractals, 155, 111724.
[13]. Li, X.#, Zhong, C. Q.#, Wu, R.#, Xu, X., Yang, Z. H., Cai, S., ... & Han, J.* (2021). RIP1-dependent linear and nonlinear recruitments of caspase-8 and RIP3 respectively to necrosome specify distinct cell death outcomes. Protein & Cell, 12(11), 858-876.
[14]. Li, X., Jin, J., Zhang, X., Xu, F., Zhong, J., Yin, Z., ... & Shuai, J.* (2021). Quantifying the optimal strategy of population control of quorum sensing network in Escherichia coli. Npj Systems Biology and Applications, 7(1), 35.
[15]. Yin, Z., Zhang, P. P., Xu, F., Liu, Z., Zhu, L., Jin, J., ... & Li, X.* (2021). Cell death modes are specified by the crosstalk dynamics within pyroptotic and apoptotic signaling. Chaos: An Interdisciplinary Journal of Nonlinear Science, 31(9).
[16]. Xu, F., Yin, Z., Zhu, L., Jin, J., He, Q., Li, X.*, & Shuai, J. (2021). Oscillations governed by the incoherent dynamics in necroptotic signaling. Frontiers in Physics, 9, 726638.
[17]. Li, X., Zhong, C. Q., Yin, Z., Qi, H., Xu, F., He, Q., & Shuai, J. (2020). Data-driven modeling identifies TIRAP-independent MyD88 activation complex and myddosome assembly strategy in LPS/TLR4 signaling. International Journal of Molecular Sciences, 21(9), 3061.
[18]. Li, X., Wu, Y., Gao, X., Cai, M., & Shuai, J.* (2018). Wave failure at strong coupling in intracellular C a 2+ signaling system with clustered channels. Physical Review E, 97(1), 012406.
[19]. Zhang, J.#, Li, X.#, Liang, L., Huang, S., & Zhang, H. (2013). Effects of external stimuli on the pacemaker function of the sinoatrial node in sodium channel gene mutations models. Science China Life Sciences, 56, 818-822.
