Projects per year
Personal profile
Personal profile
Dr. Francesco Zonta has a background in Theoretical and Mathematical Physics, specializing in Statistical Mechanics and Thermodynamics. He completed his Ph.D. in Physics at Padua University, where he studied the connection between statistical and topological properties of polymers. During his doctoral work, his research interests shifted towards simulating biological macromolecules, particularly DNA and proteins. After completing his Ph.D., he worked as a postdoctoral researcher at the Venetian Institute of Molecular Medicine (VIMM) in Padua. There, he developed a computational model using Quantum Mechanics and Molecular Dynamics simulations to study gap-junction hemichannels. He then moved to the Shanghai Institute for Advanced Immunochemical Studies (SIAIS) at ShanghaiTech University as a Research Associate Professor. At SIAIS, he directed the Informatics and Computation Platform and later became a Co-PI in the Laboratory of Computational Biology. In 2023, Dr. Francesco Zonta joined Xi'an Jiaotong-Liverpool University (XJTLU) as an Associate Professor in the Department of Biological Sciences. His current research focuses on developing computer-aided methods for drug design, especially for antibodies. He also works on multiscale simulations of biological systems and the development of machine learning force fields.
Research interests
My research focuses on modeling biological systems using multiscale approaches, with an emphasis on important drug targets. I specialize in studying Connexin hemichannels, investigating how mutations alter their permeation properties and contribute to major diseases. This work has expanded to include modeling and designing antibodies that can interact with Connexin hemichannels and other targets, aiming to treat previously incurable genetic disorders. Additionally, my research encompasses developing new force fields using Machine Learning techniques to enhance molecular simulations, as well as modeling COVID-19 spread in populations to understand how interventions can mitigate infections. Throughout these projects, I employ various computational methods, ranging from atomistic Molecular Dynamics simulations to larger-scale population models, to gain comprehensive insights into complex biological systems and their interactions.
Experience
2023 - Associate Professor, XJTLU, Department of Biological Sciences, School of Science
2015-2023 - Research Associate Professor, ShanghaiTech University, SIAIS
Director of the Bioinformatic and Computational Biology Platform
Co-PI of the Laboratory of Computational Biology
2011-2015 - Young Researcher, Padova University, Department of Physics and Astronomy
2007 - 2011 - Post Doc, Venetian Institute for Molecular Medicine
Teaching
2023/24 BIO311 Modeling for Computational Biology
2023/24 SCI002 Scientific Principles and Methods
2022/23 APH408 Computer-assisted Drug Development
Expertise related to UN Sustainable Development Goals
In 2015, UN member states agreed to 17 global Sustainable Development Goals (SDGs) to end poverty, protect the planet and ensure prosperity for all. This person’s work contributes towards the following SDG(s):
Education/Academic qualification
Ph.D. in Physics, Padova University, 2007
MSc in Physics, Padova University, 2003
External positions
Adjunct Lecturer, Taylor's University Malaysia
1 Jan 2024 → 31 Dec 2025
Person Types
- Staff
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Collaborations and top research areas from the last five years
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Development of computational methods for the design of novel therapeutic antibodies
1/01/24 → 31/12/26
Project: Internal Research Project
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FYP: Umbrella Sampling for Binding Free Energies Prediction in Molecular Dynamics Simulation
1/10/23 → 30/06/24
Project: Other
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FYP: Moolecular Dynamics Exploration of HmAb1 Antibody Binding with Cx43 Hemichannels
1/10/23 → 30/06/24
Project: Other
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A fully human IgG1 antibody targeting connexin 32 extracellular domain blocks CMTX1 hemichannel dysfunction in an in vitro model
Tettey-Matey, A., Donati, V., Cimmino, C., Di Pietro, C., Buratto, D., Panarelli, M., Reale, A., Calistri, A., Fornaini, M. V., Zhou, R., Yang, G., Zonta, F., Marazziti, D. & Mammano, F., Dec 2024, In: Cell Communication and Signaling. 22, 1, 589.Research output: Contribution to journal › Article › peer-review
Open Access -
Erratum: Correction: A fully human IgG1 antibody targeting connexin 32 extracellular domain blocks CMTX1 hemichannel dysfunction in an in vitro model (Cell communication and signaling : CCS (2024) 22 1 DOI: 10.1186/s12964-024-01969-0)
Tettey-Matey, A., Donati, V., Cimmino, C., Pietro, C. D., Buratto, D., Panarelli, M., Reale, A., Calistri, A., Fornaini, M. V., Zhou, R., Yang, G., Zonta, F., Marazziti, D. & Mammano, F., 12 Dec 2024, In: Cell Communication and Signaling. 22, 1, p. 591 1 p.Research output: Contribution to journal › Comment/debate
Open Access -
From sequence to mechanobiology? Promises and challenges for AlphaFold 3
Zonta, F. & Pantano, S., 1 Sept 2024, In: Mechanobiology in Medicine. 2, 3Research output: Contribution to journal › Review article › peer-review
1 Citation (Scopus) -
Molecular Dynamics Simulation of Permeation Through Connexin Channels
Zonta, F., Mammano, F. & Pantano, S., 8 Apr 2024, Methods in Molecular Biology: Connexin Hemichannels. Vol. 2801. p. 45-56 12 p. (Methods in Molecular Biology; vol. 2801).Research output: Chapter in Book or Report/Conference proceeding › Chapter › peer-review
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Antibody gene transfer treatment drastically improves epidermal pathology in a keratitis ichthyosis deafness syndrome model using male mice
Peres, C., Sellitto, C., Nardin, C., Putti, S., Orsini, T., Di Pietro, C., Marazziti, D., Vitiello, A., Calistri, A., Rigamonti, M., Scavizzi, F., Raspa, M., Zonta, F., Yang, G., White, T. W. & Mammano, F., Mar 2023, In: EBioMedicine. 89, 104453.Research output: Contribution to journal › Article › peer-review
Open Access
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Scientific Reports (Journal)
Francesco Zonta (Reviewer)
Sept 2024Activity: Peer-review and editorial work of publications › Publication Peer-review
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Menial Tasks working group (Event)
Justin Fendos (Member) & Francesco Zonta (Member)
25 Jun 2024 → …Activity: Membership › Membership of committee
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In Silico Design of Therapeutic Antibodies
Francesco Zonta (Invited speaker)
24 May 2024 → 26 May 2024Activity: Talk or presentation › Invited talk
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AI at Work working committee (Event)
Justin Fendos (Member), Shuihua Wang (Member) & Francesco Zonta (Member)
3 May 2024 → 30 Aug 2025Activity: Membership › Membership of committee
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Scientific Reports (Journal)
Francesco Zonta (Member of editorial board)
17 Apr 2024 → …Activity: Peer-review and editorial work of publications › Editorial work