论文成果
- [1]. Suoqin Jin , Dingjie Wang 和 Xiufen Zou. Trajectory Control in Nonlinear Networked Systems And Its Applications To Complex Biological Systems. SIAM J. Appl. Math.. 78 (1). 629—649. 2018.
- [2]. Dingjie Wang 和 Xiufen Zou. A new centrality measure of nodes in multilayer networks under the framework of tensor computation. Applied Mathematical Modelling. 54. 46–63. 2018.
- [3]. Wei Zheng , Dingjie Wang 和 Xiufen Zou. Control of multilayer biological networks and applied to target identification of complex diseases. BMC Bioinformatics. 20. 271. 2019.
- [4]. Xiao Tu , Qinran Zhang , Wei Zhang 和 Xiufen Zou. Single-cell data-driven mathematical model reveals possible molecular mechanisms of embryonic stem-cell differentiation. Mathematical Biosciences and Engineering. 16 (5). 5877–5896. 2019.
- [5]. Yuewu Liu 和 Xiufen Zou. A new model system for exploring assembly mechanisms for HIV-1 immature capsid in vivo. Bulletin of Mathematical Biology. 81 (5). 1506–1526. 2019.
- [6]. Anjing Fan , Haitao Wang , Hua Xiang 和 Xiufen Zou. Inferring large-scale gene regulatory networks using a randomized algorithm based on singular value decomposition. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 16 (6). 1997-2008. 2019.
- [7]. Dingjie Wang , Wei Yu 和 Xiufen Zou. Tensor-based mathematical framework and new centralities of temporal multilayer networks. Information Sciences. 512. 563–580. 2020.
- [8]. Dingjie Wang , Xiufen Zou 和 Kin Fai Au . A network-based computational framework to predict and differentiate functions for gene isoforms using exon-level expression data. Methods. 189. 54-64. 2020.
- [9]. Xiaoying Zheng , Suoqin Jin , Qing Nie 和 Xiufen Zou. scRCMF: Identification of Cell Subpopulations and Transition States From Single-Cell Transcriptomes. IEEE Transactions on Biomedical Engineering. 67 (5). 1418-1428. 2020.
- [10]. Xiao Zheng , Yuan Huang 和 Xiufen Zou. scPADGRN: A preconditioned ADMM approach for reconstructing dynamic gene regulatory network using single-cell RNA sequencing data. PloS Comput Biol. 16 (7). e1007471. 2020.
- [11]. Jie Yang , Chen Ma , Yu Zhao , Anjing Fan , Xiufen Zou 和 Zishu Pan. Hepatitis B virus core particles containing a conserved region of the G protein combined with interleukin-35 protected mice against respiratory syncytial virus infection without vaccine-enhanced immunopathology. Journal of Virology. 94 (13). e00007-20. 2020.
- [12]. Zhihao Yao , Jing Zhang 和 Xiufen Zou. A general index for linear and nonlinear correlations for high dimensional genomic data. BMC Genomics. 21 (1). 846. 2020.
- [13]. Wei Zhang , Yuanyuan Li 和 Xiufen Zou. SCCLRR: A Robust Computational Method for Accurate Clustering Single Cell RNA-seq Data. IEEE Journal of Biomedical and Health Informatics. 25 (1). 247-256. 2021.
- [14]. Chen Ma , Zhihao Yao , Qinran Zhang 和 Xiufen Zou. Quantitative integration of radiomic and genomic data improves survival prediction of low-grade glioma patients. MATHEMATICAL BIOSCIENCES AND ENGINEERING. 18 (1). 727-744. 2020.
- [15]. Alan Sariol , Samantha Mackin , Juan E. Abrahante , Chen Ma , Yu Zhou , Qinran Zhang , Xiufen Zou , Merri-Grace Allred , David K. Meyerholz 和 Stanley Perlman. Microglia depletion exacerbates demyelination and impairs remyelination in a neurotropic coronavirus infection,. Proceedings of the National Academy of Sciences of the United States of America ( PNAS). 117 (39). 24464-24474. 2020.
- [16]. Yu Zhou , Mingzan Huang , Yingan Jiang 和 Xiufen Zou. Data-Driven Mathematical Modeling and Dynamical Analysis for SARS-CoV-2 Coinfection with Bacteria. International Journal of Bifurcation and Chaos. 31 (11). 2150163. 2021.
- [17]. Shun Wang , Mengqian Hao , Zishu Pan , Jinzhi Lei 和 Xiufen Zou. Data-driven multi-scale mathematical modeling of SARS-CoV-2 infection reveals heterogeneity of COVID-19 patients. PLOS Computational Biology. 17 (11). e1009587. 2021.
- [18]. Mengqian Hao , Xiufen Zou 和 Suoqin Jin.. Identification of Intercellular Signaling Changes Across Conditions and Their Influence on Intracellular Signaling Response From Multiple Single Cell Datasets. Frontiers in Genetics. 12. 751158. 2021.
- [19]. Ruiyang Liu , Shun Wang , Xuewen Tan 和 Xiufen Zou. Identifying optimal adaptive therapeutic schedules for prostate cancer through combining mathematical modeling and dynamic optimization. Applied Mathematical Modelling. 107. 688-700. 2022.
- [20]. Sicheng Li , Shun Wang 和 Xiufen Zou. Data-driven mathematical modeling and quantitative analysis of cell dynamics in the tumor microenvironment,. Computers and Mathematics with Applications. 113. 300-314. 2022.
- [21]. Zhijie Ni , Xiaoying Zheng , Xiao Zheng 和 Xiufen Zou. scLRTD : A Novel Low Rank Tensor Decomposition Method for Imputing Missing Values in Single-Cell Multi-Omics Sequencing Data. IEEE/ACM Transactions on Computational Biology and Bioinformatics. 19 (2). 1144-1153. 2022.
- [22]. Yuyang Xiao , Juan Shen 和 Xiufen Zou. Mathematical modeling and dynamical analysis of anti-tumor drug dose-response. Mathematical Biosciences and Engineering. 19 (4). 4120–4144. 2022.
- [23]. Jingren Niu , Qing Tan , Xiufen Zou 和 Suoqin Jin. Accurate prediction of glioma grades from radiomics using a multi-filter and multi-objective-based method. Mathematical Biosciences and Engineering. 20 (2). 2890–2907. 2022.
- [24]. Qinran Zhang , Suoqin Jin 和 Xiufen Zou. scAB detects multiresolution cell states with clinical significance by integrating single-cell genomics and bulk sequencing data,. Nucleic Acids Research. 50 (21). 12112–12130. 2022.
- [25]. Qinran Zhang , Yuhong Xu , Shiyang Kang , Zhihao Yao , Haitao Wang , Qinian Wu , Qi Zhao , Junquan Chen , Qihua Zhang , Rui‐hua Xu , Xiufen Zou 和 Huiyan Luo. A novel computational framework for integrating multidimensional data to enhance accuracy in predicting the prognosis of colorectal cancer. MedComm – Future Med. e27. 1-13. 2022.
- [26]. Chang Hu , Qing Tan , Qinran Zhang , Yiming Li , Fengyun Wang , Xiufen Zou 和 Zhiyong Peng. Application of interpretable machine learning for early prediction of prognosis in acute kidney injury. Computational and Structural Biotechnology Journal. 20. 2861–2870. 2022.
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